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SettingsResearch demo · not for clinical or commercial use
Corollary
  1. Catalog
  2. Docking & Binding
  3. DiffDock-PP

Docking & Binding · MIT

DiffDock-PP

Diffusion docking for protein–protein interfaces.

Commercial use permittedThe MIT licence allows use in commercial research and products.MIT
Availability
Not runnable yet

No backend is configured for this model.

Typical latency
1.2min
Credits per run
~350
Compute tier
B · Standard

30s–5min

Not runnable yet

This model isn't available to run right now.

Run this model

DiffDock-PP

Needs receptor (pdb), ligand protein (pdb)

About this model

The protein–protein counterpart to DiffDock, for PPI-directed discovery where the ligand is itself a protein. Useful for modelling complexes when co-folding is too expensive or the partners are known.

Standardized I/O contract

Every model in the Hub speaks the same contract, which is what lets the Router and the agent call any of them without special-casing.

Inputs

  • protein_atextarea · required

    Receptor (PDB)

  • protein_btextarea · required

    Ligand protein (PDB)

Outputs

  • pdbstructure

    All-atom coordinates in PDB format, viewable and downloadable.

  • posestable

    Ranked complexes with confidence.

Specification

Hardware
1× A100 40GB
GPU memory
24 GB
Version
1.0
Licence
MIT
Backend
not configured
MCP server
mcp-molecule-server

Tasks

protein protein docking
ppidockingdiffusion