Protein Design · Su et al., Westlake University
Structure-aware protein LM using combined sequence + structure tokens.
1–30s
Runs on On-demand GPU
Runs on our servers with on-demand compute. A first run needs time to load the model; active capacity can be reused and scales down when idle.Run this model
About this model
SaProt tokenizes structure alongside sequence with Foldseek's 3Di alphabet, giving representations that beat ESM2 on many functional prediction tasks. Worth the extra structure input whenever you have one.
Standardized I/O contract
Every model in the Hub speaks the same contract, which is what lets the Router and the agent call any of them without special-casing.
Inputs
Protein sequence
Structure (PDB or entry code)
Mutations to score
Outputs
Structure-aware representation.
