Genome assembly and quality · Software
mitochondria-simulator
Simulates Illumina or PacBio reads from a mitochondrial genome with chloroplast and nuclear contamination, then assembles them, to find the depth and assembler that recover it.
What mitochondria-simulator is
Simulates Illumina or PacBio reads from a mitochondrial genome with chloroplast and nuclear contamination, then assembles them, to find the depth and assembler that recover it.
Run it here
The research agent sets mitochondria-simulator up on its machine the first time a task needs it, then runs it and reads the output back to you. Nothing to install on your side.
Try asking
“Simulate Illumina reads from this plant mitogenome at 50x and 100x with 5% chloroplast and nuclear contamination, assemble them with SPAdes and tell me how much of the genome comes back.”
Questions
Can I run mitochondria-simulator online without installing it?
The research agent sets mitochondria-simulator up on its machine the first time a task needs it, then runs it and reads the output back to you. Nothing to install on your side.
What licence is mitochondria-simulator under?
GPL-3.0. The terms are published at https://github.com/lufuhao/mitochondria-simulator.