Protein structure · Software
Foldseek
Finds proteins with a similar 3D structure by searching a chain against a snapshot of the PDB kept on the machine.
What Foldseek is
Finds proteins with a similar 3D structure by searching a chain against a snapshot of the PDB kept on the machine.
Run it here
Foldseek is preinstalled on the machine behind every research conversation. Ask the agent in plain language, or give it the exact command — it runs it, reads the output and explains it.
Try asking
“Find the structures in the PDB most similar to PDB entry 1TIM with Foldseek and report TM-score and coverage.”
Questions
Can I run Foldseek online without installing it?
Foldseek is preinstalled on the machine behind every research conversation. Ask the agent in plain language, or give it the exact command — it runs it, reads the output and explains it.
What licence is Foldseek under?
Foldseek is published under its authors' own licence; the project page at https://github.com/steineggerlab/foldseek states it.