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SettingsResearch demo · not for clinical or commercial use
Corollary
  1. Catalog
  2. Genomics & Single-Cell
  3. DNABERT-2

Genomics & Single-Cell · Zhou et al., Northwestern

DNABERT-2

BPE-tokenised genomic BERT for motif, splice site and regulatory classification.

Commercial use permittedThe Apache-2.0 licence allows use in commercial research and products.Apache-2.0
Availability
On demand
Typical latency
800ms
Credits per run
~7
Compute tier
A · Fast

1–30s

Runs on On-demand GPU

Runs on our servers with on-demand compute. A first run needs time to load the model; active capacity can be reused and scales down when idle.

Run this model

DNABERT-2

Needs dna sequence

About this model

DNABERT-2 replaces k-mer tokenisation with byte-pair encoding, which makes it both faster and better across the GUE benchmark suite. A solid, cheap baseline for genomic classification tasks.

Standardized I/O contract

Every model in the Hub speaks the same contract, which is what lets the Router and the agent call any of them without special-casing.

Inputs

  • sequencesequence · required

    DNA sequence

Outputs

  • embeddingvector

    Sequence representation.

Specification

Hardware
1× A100 16GB
GPU memory
8 GB
Version
2.0
Licence
Apache-2.0
Backend
On demandOn-demand GPU
MCP server
mcp-genomics-server

Tasks

motif discoveryclassification

Source

  • Model card
genomicsclassificationapache-2