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Corollary
  1. Catalog

Library

Find the model or dataset for the question you have.

Ask in plain language and we will work out where the answer lives — or filter the index yourself. Almost everything here runs on our servers, from this page, with no setup.

Models
309
Datasets
254
Organisations
148

Labs, institutes and companies

Ready to run
21

Including 6 that run free and instantly

Looking for a particular value, not a particular dataset?Search schemas, rows and column statistics inside the data itself.
Every model, A–Z309
  • AbLang2Oxford Protein Informatics Group
  • ABMIL (CONCH v1.5 features, pc108-24k)MahmoodLab
  • ABMIL (UNI features, pc108-24k)MahmoodLab
  • ABMIL (UNI2 features, pc108-24k)MahmoodLab
  • ACE2-ERA5allenai
  • ADMET-AISwanson et al., Stanford
  • AIFS ENS 1.0ecmwf
  • AIFS ENS 2.0ecmwf
  • AIFS Single 0.2.1ecmwf
  • AIFS Single 1.0ecmwf
  • AIFS Single 1.1ecmwf
  • AIFS Single 2.0ecmwf
  • AIMNet2 (B97-3c, 2025)isayevlab
  • AIMNet2 ωB97M-D3isayevlab
  • AIMNet2-NSEisayevlab
  • AIMNet2-Pdisayevlab
  • AIMNet2-rxnisayevlab
  • Aion Basepolymathic-ai
  • AlphaFlow / BioEmuMIT / Microsoft Research
  • AlphaFold DB LookupDeepMind / EMBL-EBI
  • AlphaFold2DeepMind (served as BioNeMo NIM)
  • AlphaGenomegoogle
  • AmberToolsAmber consortium
  • ANARCIOxford Protein Informatics Group
  • AntiFoldHummer et al., DTU
  • AQAffinitySandboxAQ
  • AstroCLIPpolymathic-ai
  • AstroLLaMAUniverseTBD
  • Auroramicrosoft
  • AutoDock VinaScripps Research
  • AutoDock-GPUScripps Research
  • AVES2-BEATsEarthSpeciesProject
  • BindCraftOvchinnikov Lab / Baker Lab
  • BioCLIP 2imageomics
  • BioEmumicrosoft
  • BioMedGPT-R1PharMolix / OpenBioMed
  • BioReason-Pro RLwanglab
  • BioReason-Pro SFTwanglab
  • BioVERSEIBM Research
  • BOA — Basis Overlap Architecturesciai-lab
  • Boltz-2MIT × Recursion
  • Botanic0-Lliving-models
  • Botanic0-Mliving-models
  • Botanic0-Sliving-models
  • Botanic1-Lliving-models
  • Botanic1-Mliving-models
  • Botanic1-M SAE (k=64, codebook 8192)living-models
  • Botanic1-Sliving-models
  • Carbon-3BHuggingFaceBio
  • Carbon-500MHuggingFaceBio
  • Carbon-8BHuggingFaceBio
  • Carbon-AHugging Face, from GENERanno (Gener Team)
  • Carbon-XHugging Face, Zhongguancun Academy and TIGEM
  • cBottlenvidia
  • CellFMMulti-institution consortium
  • Chai-1Chai Discovery
  • ChatNTInstaDeepAI
  • Chemprop D-MPNN — toxicity panelSwanson et al., Stanford · Chemprop, MIT
  • Clinical Camel 70Bwanglab
  • ColabFoldSteinegger Lab
  • CoLiPRImicrosoft
  • CONCHMahmoodLab
  • CONCH v1.5MahmoodLab
  • CYP Inhibition Modelopenadmet
  • DeepSpot-Mratschlab
  • DiffDockMIT / Barzilay Lab
  • DiffDock-PPMIT
  • DiffLinkerCorreia Lab / EPFL
  • DiffSBDDCorreia Lab / EPFL
  • DNABERT-2Zhou et al., Northwestern
  • DoctoBERT-fr-basedoctolib-lab
  • DoctoModernBERT-fr-basedoctolib-lab
  • DPLM-2Nanjing University / ByteDance
  • EnformerDeepMind
  • Equiformer v3mirror-physics
  • ESM-IF1Meta FAIR
  • ESM2-3BMeta FAIR
  • ESM2-650MMeta FAIR
  • ESMC 300Mbiohub
  • ESMC 300M (Dec 2024)biohub
  • ESMC 600Mbiohub
  • ESMC 600M (Dec 2024)biohub
  • ESMC 6Bbiohub
  • ESMFoldMeta AI (FAIR)
  • ESMFold2biohub
  • ESMFold2-Experimentalbiohub
  • ESMFold2-Experimental-Fastbiohub
  • ESMFold2-Fastbiohub
  • ether0futurehouse
  • eva-rnaScientaLab
  • Evo 2Arc Institute / Stanford
  • EVOLVEproHarvard / Broad Institute
  • FlashPPItattabio
  • FourCastNet 3nvidia
  • GalacticaMeta AI
  • GENA-LM BERT base (T2T)AIRI-Institute
  • GENA-LM BERT large (T2T)AIRI-Institute
  • GeneformerTheodoris et al., Gladstone Institutes
  • Genos 1.2BZhejiangLab
  • gLM2 650Mtattabio
  • GninaKoes Lab / University of Pittsburgh
  • GO-GPTwanglab
  • GROMACSGROMACS consortium
  • GROVERTsinghua University
  • HEST Tissue SegmentationMahmoodLab
  • HiRO-ACEallenai
  • HuatuoGPT-Vision 7BFreedomIntelligence
  • IgFoldRuffolo et al., Johns Hopkins
  • ImmuneBuilderOxford Protein Informatics Group
  • Indus SDE v0.2nasa-impact
  • IntelliFoldIntelliGen AI
  • Kimina-Prover Distill 1.7BAI-MO
  • Kimina-Prover Distill 8BAI-MO
  • Kimina-Prover Preview Distill 7BAI-MO
  • KRONOSMahmoodLab
  • La-RiboGENTEL Lab, Shanghai Jiao Tong University
  • LigandMPNNBaker Lab / UW IPD
  • LULA-1.1omtx
  • MACE-MP-0mace-foundations
  • MACE-MPA-0mace-foundations
  • MadeleineMahmoodLab
  • Make-A-Shape · multi-view 20MADSKAILab
  • Make-A-Shape · point-cloud 20MADSKAILab
  • Make-A-Shape · single-view 20MADSKAILab
  • Make-A-Shape · voxel 16³ADSKAILab
  • Make-A-Shape · voxel 32³ADSKAILab
  • MAMMALIBM Research
  • MAMMAL solubilityIBM Research
  • MarinDNA m5.1 1B base modelmarin-dna
  • MatterGenmicrosoft
  • MedASRgoogle
  • MedGemma 1.5 4Bgoogle
  • MedGemma 27Bgoogle
  • MedSAMwanglab
  • MedSigLIPgoogle
  • MegaMolBARTNVIDIA / BioNeMo
  • MIST 1.8B · ⟨R²⟩mist-models
  • MIST 1.8B · BACEmist-models
  • MIST 1.8B · BBBPmist-models
  • MIST 1.8B · ClinToxmist-models
  • MIST 1.8B · Cvmist-models
  • MIST 1.8B · ESOLmist-models
  • MIST 1.8B · FreeSolvmist-models
  • MIST 1.8B · G298mist-models
  • MIST 1.8B · H298mist-models
  • MIST 1.8B · HIVmist-models
  • MIST 1.8B · HOMOmist-models
  • MIST 1.8B · HOMO-LUMO gapmist-models
  • MIST 1.8B · Lipomist-models
  • MIST 1.8B · LUMOmist-models
  • MIST 1.8B · QM8mist-models
  • MIST 1.8B · SIDERmist-models
  • MIST 1.8B · Tox21mist-models
  • MIST 1.8B · U0mist-models
  • MIST 1.8B · U298mist-models
  • MIST 1.8B · ZPVEmist-models
  • MIST 1.8B · α (polarizability)mist-models
  • MIST 1.8B · μ (dipole)mist-models
  • MIST 1.8B basemist-models
  • MIST 26.9M · boiling pointmist-models
  • MIST 26.9M · dnmist-models
  • MIST 26.9M · flash pointmist-models
  • MIST 26.9M · melting pointmist-models
  • MIST 26.9M · odourmist-models
  • MIST 27.0M · conductivitymist-models
  • MIST 27.1M · ETNmist-models
  • MIST 28M · BACEmist-models
  • MIST 28M · BBBPmist-models
  • MIST 28M · ClinToxmist-models
  • MIST 28M · ESOLmist-models
  • MIST 28M · FreeSolvmist-models
  • MIST 28M · HIVmist-models
  • MIST 28M · Lipomist-models
  • MIST 28M · MUVmist-models
  • MIST 28M · pKamist-models
  • MIST 28M · QM8mist-models
  • MIST 28M · SIDERmist-models
  • MIST 28M · solvent propertiesmist-models
  • MIST 28M · tmQMmist-models
  • MIST 28M · Tox21mist-models
  • MIST 28M · ToxCastmist-models
  • MIST 28M basemist-models
  • MIST mixturesmist-models
  • ML4Floodsisp-uv-es
  • MM/GBSAAmber consortium
  • MMPT-FMMerck
  • ModernGENA baseAIRI-Institute
  • ModernGENA largeAIRI-Institute
  • Molecular Property CalculatorCorollary Labs
  • MolFormerIBM Research
  • MolMIMNVIDIA BioNeMo
  • MosaicAMLab-UvA
  • NASA-SMD-IBMnasa-impact
  • NatureLM-audioEarthSpeciesProject
  • Nessorecursionpharma
  • NexaMass V3 StructAethronPhantom
  • NTv3 650MInstaDeepAI
  • Nucleotide Transformer 2.5BInstaDeepAI
  • Nucleotide Transformer v2InstaDeep / Wellcome Sanger
  • OC25facebook
  • OlmoEarth v1 Baseallenai
  • OlmoEarth v1 FT — AWF (Base)allenai
  • OlmoEarth v1 FT — Ecosystem Type Mapping (Base)allenai
  • OlmoEarth v1 FT — Forest Loss Driver (Base)allenai
  • OlmoEarth v1 FT — LFMC (Base)allenai
  • OlmoEarth v1 FT — Mangrove (Base)allenai
  • OlmoEarth v1 Largeallenai
  • OlmoEarth v1 Nanoallenai
  • OlmoEarth v1 Tinyallenai
  • OlmoEarth v1.1 Baseallenai
  • OlmoEarth v1.1 Nanoallenai
  • OlmoEarth v1.1 Tinyallenai
  • OlmoEarth v1.2 Baseallenai
  • OlmoEarth v1.2 Nanoallenai
  • OlmoEarth v1.2 Smallallenai
  • OlmoEarth v1.2 Tinyallenai
  • OMat24facebook
  • OMC25facebook
  • OmegaFoldHeliXon
  • OMol25facebook
  • OneGenome-RiceZhejiangLab
  • OpenDDEaurekaresearch
  • OpenFE / LomapOpen Free Energy consortium
  • OpenFoldAlQuraishi Lab / Columbia
  • OpenFold3OpenFold
  • OpenMed AnatomyDetectOpenMed
  • OpenMed BloodCancerDetectOpenMed
  • OpenMed ChemicalDetectOpenMed
  • OpenMed DiseaseDetectOpenMed
  • OpenMed DNADetectOpenMed
  • OpenMed GenomeDetectOpenMed
  • OpenMed GenomicDetectOpenMed
  • OpenMed OncologyDetectOpenMed
  • OpenMed OrganismDetectOpenMed
  • OpenMed PathologyDetectOpenMed
  • OpenMed PharmaDetectOpenMed
  • OpenMed ProteinDetectOpenMed
  • OpenMed SpeciesDetectOpenMed
  • OpenMMChodera Lab / Stanford
  • OpenPhenomrecursionpharma
  • OrbMolOrbital-Materials
  • p-IgGenopig
  • PaperQA2 (Crow)FutureHouse
  • ParagraphDeane Lab / Oxford
  • Path Foundationgoogle
  • PDB Structure FetchRCSB Protein Data Bank
  • PeptiVerseChatterjeeLab
  • PhenoSeqSentinal4D
  • ProGen2Salesforce Research
  • Promerabjing-mit
  • ProteinMPNNBaker Lab
  • Protenix-RNALiteFold
  • PXR Activation Modelopenadmet
  • QAMASBeard Lab / Randall et al.
  • Reaction prediction and fingerprintsSagawa & Kaneko · IBM RXN
  • REINVENT 4AstraZeneca
  • RetroChimeraMicrosoft Research AI for Science
  • RFDiffusionBaker Lab / Institute for Protein Design
  • Rhaistertahoebio
  • RoseTTAFold All-AtomBaker Lab / UW
  • RudolfV 2Aignostics
  • SamudrACE-E3SMv3allenai
  • SapiensAstraZeneca / Prihoda et al.
  • SaProtSu et al., Westlake University
  • SCENIC+ / pySCENICVIB-KU Leuven
  • scGPTUniversity of Toronto
  • SE-600Marcinstitute
  • SEALMahmoodLab
  • Sequence AnalyticsCorollary Labs
  • ShEPhERD-2Coley Research Group, MIT
  • Skala 1.0microsoft
  • Skala 1.1microsoft
  • SMINAKoes Lab
  • STACK Largearcinstitute
  • Stack-Large Alignedarcinstitute
  • StarCOPisp-uv-es
  • StormCast V1nvidia
  • SuperIXisp-uv-es
  • Surya 1.0nasa-ibm-ai4science
  • Surya Solar Flaresnasa-ibm-ai4science
  • Surya Solar Windnasa-ibm-ai4science
  • Tahoe-100M-SCVItahoebio
  • Tahoe-x1tahoebio
  • TEDDYMerck
  • TimesFM 2.5Google Research
  • TITANMahmoodLab
  • TxGemma 27B Chatgoogle
  • TxGemma 27B Predictgoogle
  • TxGemma 2Bgoogle
  • TxGemma 9B Chatgoogle
  • TxGemma 9B Predictgoogle
  • UMAfacebook
  • UNIMahmoodLab
  • UNI2-hMahmoodLab
  • WaLa DM1 1BADSKAILab
  • WaLa DM4 1BADSKAILab
  • WaLa DM6 1BADSKAILab
  • WaLa MVDream DM6ADSKAILab
  • WaLa MVDream RGB4ADSKAILab
  • WaLa PC 1BADSKAILab
  • WaLa RGB4 1BADSKAILab
  • WaLa SK 1BADSKAILab
  • WaLa SV 1BADSKAILab
  • WaLa UN 1BADSKAILab
  • WaLa VX16 1BADSKAILab
  • WALRUSpolymathic-ai
  • X-CellXaira-Therapeutics
  • Zatom-2Berkeley Lab, Cambridge and collaborators
  • Zero-To-CAD Qwen3-VL 2BADSKAILab
Every dataset, A–Z254
  • ABC-1MADSKAILab
  • active_matterpolymathic-ai
  • aimo-validation-aimeAI-MO
  • aimo-validation-amcAI-MO
  • aimo-validation-math-level-4AI-MO
  • aimo-validation-math-level-5AI-MO
  • AirfRANS_originalPLAID-datasets
  • AlphaFoldDBLiteFold
  • aops_rawAI-MO
  • aqcat25-datasetSandboxAQ
  • arxiv-abstracts-largeUniverseTBD
  • AstroLLaVA_convosUniverseTBD
  • ATBAllTheBacteria
  • AtompackLeMaterial
  • atomvison_atomistic_stm_images_2d_materials_unique_chemical_compositions_structure_v1-1foundry-ml
  • atomvison_simulated_atomistic_stem_images_2d_materials_unique_chemical_compositions_structure_bafoundry-ml
  • B3DBmaomlab
  • Bac-Corpus-dna-intergenic-sequences-high-diversityAllTheBacteria
  • Bac-Corpus-protein-sequences-high-diversityAllTheBacteria
  • BEANS-ZeroEarthSpeciesProject
  • BFDLiteFold
  • BioMysteryBench-fullAnthropic
  • BioMysteryBench-previewAnthropic
  • bioreason-pro-sft-reasoning-datawanglab
  • BixBenchfuturehouse
  • Botanic1-pretrainingliving-models
  • camelyon16-featuresowkin
  • carbon-pretraining-corpusHuggingFaceBio
  • CATHLiteFold
  • CCAluminary-shift
  • ChAFFmaomlab
  • ChemBenchjablonkagroup
  • chempile-captionjablonkagroup
  • chempile-codejablonkagroup
  • chempile-educationjablonkagroup
  • chempile-instructionjablonkagroup
  • chempile-liftjablonkagroup
  • chempile-mliftjablonkagroup
  • chempile-paperjablonkagroup
  • chempile-reasoningjablonkagroup
  • clinvar-vepHuggingFaceBio
  • CloudSEN12Plusisp-uv-es
  • codeparrot_megatronADSKAILab
  • CombiBenchAI-MO
  • constellarationproxima-fusion
  • core-sdonasa-ibm-ai4science
  • crosslab-nmcGenData-Research
  • CryptoCENmaomlab
  • CT_DeepLesion-MedSAM2wanglab
  • CycPepMPDBLiteFold
  • dataset_concrete_compressive_strengthfoundry-ml
  • dataset_debyet_aflowfoundry-ml
  • dataset_exfoliationefoundry-ml
  • dataset_li_conductivityfoundry-ml
  • dataset_metallicglass_dmaxfoundry-ml
  • dataset_metallicglass_rcfoundry-ml
  • dataset_metallicglass_rc_llmfoundry-ml
  • dataset_mg_alloyfoundry-ml
  • dataset_perovskite_asrfoundry-ml
  • dataset_perovskite_conductivityfoundry-ml
  • dataset_perovskite_formationefoundry-ml
  • dataset_perovskite_habsfoundry-ml
  • dataset_perovskite_stability_updatedfoundry-ml
  • dataset_perovskite_tecfoundry-ml
  • dataset_rpv_ttsfoundry-ml
  • dataset_thermalcond_aflowfoundry-ml
  • dataset_thermalexp_aflowfoundry-ml
  • dielectric_constant_v1-1foundry-ml
  • diffusion_v1-4foundry-ml
  • DIPSDror Lab, Stanford
  • direct_electron_detectorceleritas_xs_simulated_readout_images_electron_counting_model_v1-1foundry-ml
  • DisProtLiteFold
  • double_perovskite_bandgap_v1-1foundry-ml
  • drivaermlneashton
  • drug-target-activityeve-bio
  • DynaCLR-databiohub
  • elastic_tensor_v1-1foundry-ml
  • electromigration_v1-1foundry-ml
  • elwood_md_v1-2foundry-ml
  • EmeraldBaytahoebio
  • EO-via-NLPnasa-impact
  • equational-theories-benchmarkSAIRfoundation
  • equational-theories-selected-problemsSAIRfoundation
  • ESMAtlasLiteFold
  • ESMC-SAE-Featuresbiohub
  • ether0-benchmarkfuturehouse
  • EvolutionaryLiteFold
  • excess-propertiesmist-models
  • finemed-frdoctolib-lab
  • finemed-rephrased-frdoctolib-lab
  • FireProtDBLiteFold
  • FLIP2LiteFold
  • foundry_aflow_band_gaps_v1-1foundry-ml
  • foundry_g4mp2_solvation_v1-2foundry-ml
  • foundry_mp_band_gaps_v1-1foundry-ml
  • foundry_oqmd_band_gaps_v1-1foundry-ml
  • foundry_osdb_v1-1foundry-ml
  • foundry_qmc_ml_v1-1foundry-ml
  • foundry_stan_segmentation_v1-1foundry-ml
  • frontierscienceopenai
  • GDPa1ginkgo-datapoints
  • GDPx1ginkgo-datapoints
  • GDPx2ginkgo-datapoints
  • GDPx3ginkgo-datapoints
  • GDPx4ginkgo-datapoints
  • genomic-niahHuggingFaceBio
  • GeometryLeanBenchAI-MO
  • GOLiteFold
  • GOALiteFold
  • healthbenchopenai
  • healthbench-professionalopenai
  • her2-challenge-2026owkin
  • hestMahmoodLab
  • hest-benchMahmoodLab
  • heusler_magnetization_v1-1foundry-ml
  • HumanProteinAtlasLiteFold
  • IEDBLiteFold
  • img_virus_plasmidwanglab
  • InterProLiteFold
  • keggwanglab
  • Kimina-Prover-PromptsetAI-MO
  • lab-benchfuturehouse
  • LeMat-BulkLeMaterial
  • LeMat-Bulk-DFT-HullLeMaterial
  • LeMat-Bulk-DFT-Hull-AllLeMaterial
  • LeMat-Bulk-MLIP-Formation-EnergiesLeMaterial
  • LeMat-Bulk-MLIP-HullLeMaterial
  • LeMat-BulkUniqueLeMaterial
  • LeMat-GenBench-embeddingsLeMaterial
  • LeMat-RhoLeMaterial
  • LeMat-SynthLeMaterial
  • LeMat-Synth-PapersLeMaterial
  • LeMat-TrajLeMaterial
  • LeMat-Traj-subsetLeMaterial
  • LLM-narrative-planning-tasksetADSKAILab
  • MaCBenchjablonkagroup
  • mask_rcnn_defect_detection_v1-1foundry-ml
  • MedDialogOpenMed
  • medical-o1-reasoning-SFTFreedomIntelligence
  • medical-o1-verifiable-problemFreedomIntelligence
  • Medical-Reasoning-SFT-MegaOpenMed
  • MedSynthAhmad0067
  • MegaScale-Tsuboyama2023LiteFold
  • MetaMathQAmeta-math
  • MgnifyLiteFold
  • MHD_64polymathic-ai
  • minif2f_testAI-MO
  • miriad-4.4Mmiriad
  • miriad-5.8Mmiriad
  • MISATOHelmholtz Munich
  • MofasaDBOrbital-Materials
  • Molecule3Dmaomlab
  • MOSESInsilico Medicine
  • msr-acc-tae25microsoft
  • multi_species_genomesInstaDeepAI
  • NCBILiteFold
  • nct-crc-heowkin
  • NTv3_benchmark_datasetInstaDeepAI
  • nucleotide_transformer_downstream_tasksInstaDeepAI
  • NuminaMath-1.5AI-MO
  • NuminaMath-CoTAI-MO
  • NuminaMath-LEANAI-MO
  • NuminaMath-TIRAI-MO
  • OASopig
  • Octant_CYP_inhibition_reactivity_blog_releaseopenadmet
  • OGtattabio
  • olmoearth-paper-embeddingsallenai
  • olympiadsAI-MO
  • olympiads-refAI-MO
  • olympiads-ref-baseAI-MO
  • OMGtattabio
  • openadmet-expansionrx-challenge-dataopenadmet
  • openadmet-expansionrx-challenge-train-dataopenadmet
  • opengenome2arcinstitute
  • OpenProteinSetLiteFold
  • opensr-testisp-uv-es
  • OpenTMEAignostics
  • PapyrusLeiden Academic Centre for Drug Research
  • parse-de-rhaistertahoebio
  • Patho-BenchMahmoodLab
  • PATHOS-PLM-EMBEDDINGSDSIMB
  • PDBLiteFold
  • PDB-CCDLiteFold
  • perovskite_opbandcenter_v1-1foundry-ml
  • perovskite_stability_v1-1foundry-ml
  • Perturb-Sapiensarcinstitute
  • perturbation-benchHuggingFaceBio
  • peS2oallenai
  • PfamLiteFold
  • piezoelectric_tensor_v1-1foundry-ml
  • planetswepolymathic-ai
  • plant-genomic-benchmarkInstaDeepAI
  • plism-dataset-tilesowkin
  • popsiclebiohub
  • principia-benchfacebook
  • principia-collectionfacebook
  • ProteinGLUEIBIVU, VU Amsterdam
  • ProteinGymLiteFold
  • ProteinNetAlQuraishi Lab
  • protenix-dataLiteFold
  • Pumpluminary-shift
  • rayleigh_benardpolymathic-ai
  • replogle-nadig-de-rhaistertahoebio
  • Replogle-Nadig-Preprintarcinstitute
  • rtm_emulationisp-uv-es
  • rxrx3recursionpharma
  • rxrx3-corerecursionpharma
  • SAIRSandboxAQ
  • SARLO-80ONERA
  • SE-167M-Humanarcinstitute
  • semiconductor_defectlevels_v1-1foundry-ml
  • SHIFT-Crashluminary-shift
  • SidechainNetKoes Lab, University of Pittsburgh
  • SKEMPI2LiteFold
  • spiqagoogle
  • SPIREAllTheBacteria
  • Stack-CellxGene45Marcinstitute
  • State-Tahoe-Filteredarcinstitute
  • steel_strength_v1-1foundry-ml
  • STRINGLiteFold
  • Submarineluminary-shift
  • superconductivity_v1-1foundry-ml
  • supernova_explosion_64polymathic-ai
  • surya-bench-flare-forecastingnasa-ibm-ai4science
  • SUVluminary-shift
  • SwissSidechainLiteFold
  • synthvision-annotated-kimiOpenMed
  • synthvision-annotated-qwenOpenMed
  • synthvision-seedsOpenMed
  • Tahoe-100Mtahoebio
  • tahoe-de-rhaistertahoebio
  • Tahoe-x1-embeddingstahoebio
  • TCGA_virtual_spatial_transcriptomics_atlasratschlab
  • TCGA-UniformTumor-8KMahmoodLab
  • TDCmaomlab
  • ThousandWorldsAstroAutomata
  • training_locating_atoms_stem_images_v1-2foundry-ml
  • traitgymHuggingFaceBio
  • TreeOfLife-200Mimageomics
  • true-cds-protein-tasksInstaDeepAI
  • UNI2-h-featuresMahmoodLab
  • UniProtKBLiteFold
  • UniRef50LiteFold
  • UniRef90LiteFold
  • viperMahmoodLab
  • WINGluminary-shift
  • winnow-ms-datasetsInstaDeepAI
  • wolverton_oxides_v1-1foundry-ml
  • WorldFloodsv2isp-uv-es
  • WxC-Benchnasa-impact
  • X-Atlas-OrionXaira-Therapeutics
  • X-Atlas-PiscesXaira-Therapeutics
  • Zero-To-CAD-100kADSKAILab
  • Zero-To-CAD-1mADSKAILab

Things that work

Filtering

90 entries in Genomics

Showing 48 of 90

Ready to run

3
ReadyModel

DNABERT-2

Zhou et al., Northwestern

BPE-tokenised genomic BERT for motif, splice site and regulatory classification.

motif discovery
ReadyModel

Evo 2

Arc Institute / Stanford

Genome-scale foundation model spanning nucleotide to whole-genome context.

sequence generation
ReadyModel

Nucleotide Transformer v2

InstaDeep / Wellcome Sanger

DNA foundation model for regulatory elements, promoters and variant scoring.

regulatory prediction

Everything else indexed

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Carbon-AHugging Face, from GENERanno (Gener Team)Find the protein-coding genes in a eukaryotic genome: exons, strand, reading frame and a confidence per gene.annotationOn demand
Carbon-XHugging Face, Zhongguancun Academy and TIGEMAsk a question about DNA in plain English, or rank variants by how typical the model finds them.variant effectOn demand
EnformerDeepMindSequence-to-expression across a 200kb window covering distal enhancers.expression predictionOn demand
La-RiboGENTEL Lab, Shanghai Jiao Tong UniversityGenerate an RNA sequence and its 3D structure together, from a length — unconditional, so no target fold or function.sequence generationOn demand
AlphaFoldDBLiteFoldAlphaFoldDB prediction index — open database of predicted protein 3D structures with confidence scores, providing structural coverage for known protein sequences at scale.Predicted StructuresExplore
ATBAllTheBacteriaAllTheBacteria: a comprehensive collection of ~2 million bacterial genome assemblies from public sequence databases, standardized for large-scale genomic analysis.Microbial GenomicsExplore
Bac-Corpus-dna-intergenic-sequences-high-diversityAllTheBacteriaHigh-diversity corpus of bacterial intergenic DNA sequences for training DNA language models on non-coding regulatory regions.Microbial GenomicsExplore
Bac-Corpus-protein-sequences-high-diversityAllTheBacteriaHigh-diversity corpus of bacterial protein sequences derived from the ATB collection, filtered for maximum sequence diversity to support protein language model pretraining.Microbial GenomicsExplore
BFDLiteFoldBFD source archive index — clustered UniProt + metagenomic protein sequences, the standard database for AlphaFold-style homology search and MSA construction.Protein SequencesExplore
bioreason-pro-sft-reasoning-datawanglabReasoning trace dataset used to supervised-fine-tune BioReason-Pro — multimodal biological problems with rationales over genomic variants and pathway data.Biological Reasoning CorpusExplore
Botanic1-pretrainingliving-modelsThe genomic sequence corpus used to pre-train the Botanic1 plant genome models — 7.2M training windows of 8,192 bp spanning 320 embryophyte species, roughly 59B effective base pairs.Genomic SequencesExplore
carbon-pretraining-corpusHuggingFaceBioCarbon pretraining corpus — the curated DNA sequence dataset used to train the Carbon-500M / 3B / 8B genomic foundation models.Genomic Pretraining CorpusExplore
CATHLiteFoldCATH domain classification — hierarchical classification of protein domain structures by class, architecture, topology, and homologous superfamily.Domain ClassificationExplore
clinvar-vepHuggingFaceBioClinVar variants annotated with VEP (Variant Effect Predictor) — formatted for benchmarking genomic-LLM pathogenicity classification.Clinical VariantsExplore
EmeraldBaytahoebioEmerald Bay — single-cell perturbation dataset of 1.8M+ transcriptomic profiles spanning 52 cell lines × 91 drug treatments (plus combinations), generated on Tahoe’s MOSAIC high-throughput platform with paired transcriptional and drug-phenotype readouts over a five-day culture.Single-Cell PerturbationExplore
ESMAtlasLiteFoldHub mirror of the ESM Metagenomic Atlas — large-scale predicted metagenomic protein structures generated with ESMFold, packaged as webdataset shards.Predicted StructuresExplore
ESMC-SAE-FeaturesbiohubFeature table for the 16,384-feature sparse autoencoder trained on layer 60 of ESMC-6B — supports mechanistic-interpretability research on protein language models.InterpretabilityExplore
EvolutionaryLiteFoldPrecomputed evolutionary sequence-alignment data (MMseqs2-style) packaged for the Hub — drop-in MSA features for protein-LM and structure-prediction pipelines.MSA / Training CorpusExplore
genomic-niahHuggingFaceBioGenomic Needle-in-a-Haystack — long-context evaluation for genomic LLMs, measuring retrieval and reasoning over long DNA sequences.Long-Context BenchmarkExplore
GOLiteFoldGene Ontology terms — structured controlled vocabulary for describing gene-product functions, biological processes, and cellular components across organisms.OntologyExplore
GOALiteFoldGene Ontology Annotation (UniProt) — high-quality evidence-coded GO annotations for UniProtKB proteins, RNAs, and protein complexes.OntologyExplore
HumanProteinAtlasLiteFoldHuman Protein Atlas — gene and protein expression across tissues, cells, organs, pathology, and subcellular locations for human proteins.Protein AnnotationExplore
img_virus_plasmidwanglabCombined IMG/VR (uncultivated virus genomes) and IMG/PR (plasmids from genomes and metagenomes) catalog with rich functional, taxonomic, and ecological metadata.Microbial GenomicsExplore
InterProLiteFoldInterPro entries — integrated protein family, domain, repeat, and functional-site signatures across multiple member databases for sequence classification.Protein AnnotationExplore
keggwanglabKEGG pathway entries paired with variant annotations for training and evaluating multimodal biological reasoning models (used by the BioReason work).Biological ReasoningExplore
MgnifyLiteFoldMGnify protein catalogues — microbiome-derived protein sequences from EBI’s MGnify platform with train/test splits for downstream metagenomic protein tasks.MetagenomicsExplore
multi_species_genomesInstaDeepAIWhole-genome sequences for 850 species spanning bacteria, fungi, plants, and animals — the pre-training corpus for the Nucleotide Transformer model family.GenomicsExplore
NCBILiteFoldNCBI RefSeq protein shard index — curated non-redundant protein subset of NCBI’s Reference Sequence collection, packaged as parquet for efficient loading.Protein SequencesExplore
NTv3_benchmark_datasetInstaDeepAIBenchmark dataset with functional tracks and genome annotations across 7 species.GenomicsExplore
nucleotide_transformer_downstream_tasksInstaDeepAI18 genomic prediction benchmark tasks covering histone marks, regulatory regions, splice sites, and promoter activity across human and multi-species genomes.GenomicsExplore
OGtattabioOpen Genomes (OG) — curated genome-sequence corpus from Tatta Bio for genomic ML pretraining and benchmarking.Genomic CorpusExplore
OMGtattabioOpen Mixed Genomes (OMG) — large mixed-organism nucleotide corpus underpinning Tatta Bio’s gLM2 genomic foundation models.Genomic CorpusExplore
opengenome2arcinstituteCurated collection of prokaryotic and eukaryotic genomic sequences for training and benchmarking large-scale biological foundation models.GenomicsExplore
OpenProteinSetLiteFoldOpenProteinSet — open-source MSA training corpus released by the OpenFold team (Ahdritz et al., NeurIPS 2023) reproducing AlphaFold-style training data.MSA / Training CorpusExplore
PATHOS-PLM-EMBEDDINGSDSIMBPATHOS protein language-model embeddings — precomputed feature representations supporting pathogenicity prediction and downstream macromolecular ML on protein sequences.Protein EmbeddingsExplore
PDBLiteFoldHub-packaged index over the Protein Data Bank mmCIF entries — the global archive of experimentally-determined 3D structures of biological macromolecules.Protein StructureExplore
Perturb-SapiensarcinstituteLarge-scale human single-cell perturbation dataset used in the STACK foundation-model lineage — paired baseline and perturbed expression profiles for genetic perturbation screens.Single-Cell PerturbationExplore
perturbation-benchHuggingFaceBioGenetic perturbation benchmark — evaluates how well genomic foundation models predict perturbation responses across cell states.Genomic BenchmarkExplore
PfamLiteFoldPfam — protein family and domain annotation built from curated multiple sequence alignments and profile HMMs, mirrored to the Hub as JSONL.Protein FamiliesExplore
plant-genomic-benchmarkInstaDeepAIPlant genomics benchmark spanning gene expression, chromatin accessibility, and agronomic trait prediction tasks across multiple crop and model plant species.Plant GenomicsExplore
protenix-dataLiteFoldTraining data for Protenix — ByteDance’s open-source PyTorch reproduction of AlphaFold3 handling proteins, DNA, RNA, ligands, ions, and modifications.Structure PredictionExplore
replogle-nadig-de-rhaistertahoebioDifferential-expression summary statistics for the Replogle-Nadig genome-scale CRISPR screen (4 cell lines × ~2,000 gene knockdowns: HepG2, Jurkat, K562, RPE1) — per-gene fold changes, significance, and pseudobulk deltas used to train Rhaister.CRISPR Differential ExpressionExplore
Replogle-Nadig-PreprintarcinstituteReplogle-Nadig single-cell perturbation dataset (preprint release) — Perturb-seq screens used in the STATE single-cell embedding work for perturbation-response modelling.Single-Cell PerturbationExplore
SE-167M-Humanarcinstitute167M human single-cell RNA expression profiles across diverse tissues and cell types, used for training STACK and SE single-cell foundation models.Single-Cell BiologyExplore
SPIREAllTheBacteriaSearchable Planetary-scale mIcrobiome REsource: a large-scale metagenomics resource aggregating environmental microbiome samples from diverse global habitats.Microbial GenomicsExplore

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